Index _ | A | B | C | D | E | F | G | I | M | O | P | R | S _ _MsprimeEngine (class in stdgrimmsim.engines) _SLiMEngine (class in stdgrimmsim.slim_engine) A add_dfe() (stdgrimmsim.Contig method) add_single_site() (stdgrimmsim.Contig method) Annotation (class in stdgrimmsim) asdict() (stdgrimmsim.Population method) assert_valid() (stdgrimmsim.Citation method) B because() (stdgrimmsim.Citation method) C Chromosome (class in stdgrimmsim) Citation (class in stdgrimmsim) clear_dfes() (stdgrimmsim.Contig method) Contig (class in stdgrimmsim) D DemographicModel (class in stdgrimmsim) description (stdgrimmsim.engines._MsprimeEngine attribute) (stdgrimmsim.slim_engine._SLiMEngine attribute) DFE (class in stdgrimmsim) dfe_breakpoints() (stdgrimmsim.Contig method) download() (stdgrimmsim.Annotation method) E Engine (class in stdgrimmsim) F fetch_bibtex() (stdgrimmsim.Citation method) from_data() (stdgrimmsim.Genome static method) G Genome (class in stdgrimmsim) get_annotations() (stdgrimmsim.Species method) get_chromosome() (stdgrimmsim.Genome method) get_chromosome_annotations() (stdgrimmsim.Annotation method) get_contig() (stdgrimmsim.Species method) get_default_engine() (in module stdgrimmsim) get_demographic_model() (stdgrimmsim.Species method) get_dfe() (stdgrimmsim.Species method) get_engine() (in module stdgrimmsim) get_sample_sets() (stdgrimmsim.DemographicModel method) get_samples() (stdgrimmsim.DemographicModel method) get_species() (in module stdgrimmsim) get_version() (stdgrimmsim.Engine method) I id (stdgrimmsim.engines._MsprimeEngine attribute) (stdgrimmsim.slim_engine._SLiMEngine attribute) is_cached() (stdgrimmsim.Annotation method) is_neutral (stdgrimmsim.Contig property) (stdgrimmsim.MutationType property) IsolationWithMigration (class in stdgrimmsim) M mean_gene_conversion_fraction (stdgrimmsim.Genome property) mean_mutation_rate (stdgrimmsim.Genome property) mean_recombination_rate (stdgrimmsim.Genome property) merge() (stdgrimmsim.Citation static method) mutation_types() (stdgrimmsim.Contig method) MutationType (class in stdgrimmsim) O origin (stdgrimmsim.Contig property) P PiecewiseConstantSize (class in stdgrimmsim) Population (class in stdgrimmsim) R range_gene_conversion_lengths (stdgrimmsim.Genome property) recap_and_rescale() (stdgrimmsim.slim_engine._SLiMEngine method) register_engine() (in module stdgrimmsim) register_qc() (stdgrimmsim.DemographicModel method) (stdgrimmsim.DFE method) S selective_sweep() (in module stdgrimmsim) simulate() (stdgrimmsim.Engine method) (stdgrimmsim.engines._MsprimeEngine method) (stdgrimmsim.slim_engine._SLiMEngine method) Species (class in stdgrimmsim) species_contig() (stdgrimmsim.Contig static method)